when using Rmarkdown to build a pdf with citations included, it removes the hyperlinks of the citations by default.
Looking at the latex file produced, I can see \usepackage{hyperref} in the pre-amble, but the citations look as follows:
rmd input: @sharpe
latex output: sharpe (1999)
Thus it produces a non-dynamic citation in pdf.
The latex output that I would expect is: \citet{sharpe}, which produces hyperlinked citation in pdf.
Any ideas why it writes out my bibtex inputs like this and how I can make it hyperlinked?
By default pandoc will do the rendering of the citations. I see two alternatives.
\citet{sharpe} in the Rmd instead of @sharpe. Downside: you can only render the Rmd into pdf.--natbib argument. Downside: You need an extra bibtex step when rendering into pdf.Update: You can also provide the option link-citations: true in your YAML (since pandoc v1.16) and keep the pandoc syntax for citations.
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