How can I optimise Zumero sync queries

I am currently experiencing very long sync times on a zumero synced database (well over a minute), and following some profiling, the culprit appears to be a particular query that is taking 20+ seconds (suitably anonymised):

WITH relevant_rvs AS
(
  SELECT rv.z_rv AS rv FROM zumero."mydb_089eb7ec0e2e4772ba0dde90170ee368_mysynceddb$z$rv$271340031" rv
  WHERE (rv.txid<=913960)
  AND NOT EXISTS (SELECT 1 FROM zumero."mydb_089eb7ec0e2e4772ba0dde90170ee368_mysynceddb$z$dd$271340031" dd WHERE dd.rv=rv.z_rv AND (dd.txid<=913960))
)
INSERT INTO #final_included_271340031_e021cfbe1c97213dd5adbacd667c08439fb8c6 (z_rv)
SELECT z$this.z_rv
 FROM zumero."mydb_089eb7ec0e2e4772ba0dde90170ee368_mysynceddb$z$271340031" z$this
  WHERE (z$this.z_rv IN (SELECT rv FROM relevant_rvs))
  AND MyID = (MyID = XXX AND MyOtherField=XXX)
UNION SELECT z$this.z_rv
 FROM zumero."mydb_089eb7ec0e2e4772ba0dde90170ee368_mysynceddb$z$old$271340031" z$this
  WHERE (z$this.z_rv IN (SELECT rv FROM relevant_rvs))
  AND (MyID = XXX AND MyOtherField=XXX)

I have taken the latter SELECT part of the query and ran it in isolation, which reproduces the same poor performance. Interestingly the execution plan recommends an index be applied, but I'm reluctant to go changing the schema of zumero generated tables, is adding indexes to these tables something that can be attempted safely and is it likely to help?

The source tables have 100,000ish records in them and the filter results in each client syncing 100-1000ish records, so not trivial data volumes but levels I would not expect to be causing major issues in terms of query performance.

Does anyone have any experience optimising Zumero sync performance server side? Do any indexes on source tables propagate to these tables? they don't appear to in this case.