如何有效地随机排列图形中的边缘

约瑟夫·D

我正在编写代码,以根据“配置模型”改组图形的边缘本质上,随机选择两个边线[[v1,v2)和(v3,v4)]并交换[产生(v1,v3)和(v2,v4)],如果

  • 没有创建自边缘[v1不是v3,v2不是v4];
  • 没有创建多边[边(v1,v3)和(v2,v4)不存在]。

我写了以下代码来实现这一目标

// Instantiates an empty undirected graph.
typedef boost::adjacency_list< boost::setS,
                               boost::vecS,
                               boost::undirectedS > graph_t;
graph_t graph(9);

// Adds edges to the graph.
boost::add_edge(0, 1, graph);  boost::add_edge(0, 3, graph);
boost::add_edge(0, 5, graph);  boost::add_edge(0, 7, graph);
boost::add_edge(1, 2, graph);  boost::add_edge(2, 3, graph);
boost::add_edge(2, 4, graph);  boost::add_edge(4, 8, graph);
boost::add_edge(5, 7, graph);  boost::add_edge(5, 8, graph);
boost::add_edge(6, 7, graph);  boost::add_edge(7, 8, graph);

// Number of edges.
unsigned int nb_edges = boost::num_edges(graph);

// Defines a function that give a random edge.
std::random_device rd;
std::mt19937 engine(rd());
std::uniform_int_distribution<int> get_rand_edge(0, nb_edges - 1);

// Descriptors and iterators.
graph_t::vertex_descriptor v1, v2, v3, v4;
graph_t::edge_iterator e1_it, e2_it, e_end;

// Shuffles the edges, with the condition of not creating multiple edges or self-loops.
unsigned int nb_edge_swaps(0);
while(nb_edge_swaps < 10 * nb_edges)
{
  // Gets the first edge.
  std::tie(e1_it, e_end) = boost::edges(graph);
  std::advance(e1_it, get_rand_edge(engine));
  v1 = boost::source(*e1_it, graph);
  v2 = boost::target(*e1_it, graph);

  // Gets the second edge.
  std::tie(e2_it, e_end) = boost::edges(graph);
  std::advance(e2_it, get_rand_edge(engine));
  v3 = boost::source(*e2_it, graph);
  v4 = boost::target(*e2_it, graph);

  // Avoids self-loops.
  if((v1 != v3) && (v2 != v4))
  {
    // Avoids multiple edge.
    if(boost::edge(v1, v3, graph).second == false)
    {
      // Avoids multiple edge.
      if(boost::edge(v2, v4, graph).second == false)
      {
        // Destroys the old edges.
        boost::remove_edge(*e1_it, graph);
        boost::remove_edge(boost::edge(v3, v4, graph).first, graph);
        // Creates the new edges.
        boost::add_edge(v1, v3, graph);
        boost::add_edge(v2, v4, graph);
        // Counts the number of changes.
        ++nb_edge_swaps;
      }
    }
  }
}

尽管运行缓慢,但看起来效果很好。我想知道是否还有另一种聪明的方法可以更有效地完成相同的任务我希望该解决方案使用Boost Graph Library,但欢迎提出任何想法。谢谢!

在没有太多指导的情况下,我去创建了一些比较基准。具有90个顶点和120个边的时间:

在此处输入图片说明

完整的样本详细信息(单击以获取交互式图表):

在此处输入图片说明

事实证明,我对邻接矩阵更快的直觉恰恰相反:

我认为可以通过创建选择随机边缘的专门方法来解决¹。我现在将其留给读者作为练习。

基准代码

使用https://github.com/rmartinho/nonius

#include <boost/graph/adjacency_list.hpp>
#include <boost/graph/adjacency_matrix.hpp>
#include <boost/graph/edge_list.hpp>
#include <boost/graph/random.hpp>
#include <boost/graph/graphviz.hpp>
#include <boost/container/flat_set.hpp>
#include <nonius/benchmark.h++>

namespace edge_list_detail {
    struct edge { 
        using first_type = size_t;
        using second_type = size_t;
        first_type  s;
        second_type t;

        edge(first_type s, second_type t) : s(std::min(s,t)), t(std::max(s,t)) { assert(s!=t); }
        bool operator<(edge const& other) const { return std::tie(s,t) < std::tie(other.s, other.t); }
    };

    using node_based_set = std::set<edge>;
    using flat_set       = boost::container::flat_set<edge>;

    void reserve(node_based_set const&, size_t) {}
    void reserve(flat_set& c, size_t n) { c.reserve(n); }

    void erase_two(node_based_set& from, node_based_set::iterator e1, node_based_set::iterator e2) {
        from.erase(e1);
        from.erase(e2);
    }

    void erase_two(flat_set& from, flat_set::iterator e1, flat_set::iterator e2) {
        if (e2<e1) std::swap(e1, e2);
        from.erase(e2); // invalidates higher iterators
        from.erase(e1);
    }
}

typedef boost::adjacency_list   < boost::setS, boost::vecS, boost::undirectedS > adj_list_t;
typedef boost::adjacency_matrix < boost::undirectedS                           > adj_mat_t;

static std::mt19937 engine(std::random_device{}());

static auto const sample_adj_list = [] {
    using namespace boost;
    adj_list_t graph(90);
    generate_random_graph(graph, 90, 120, engine);
    {
        std::ofstream ofs("/tmp/raw.dot");
        write_graphviz(ofs, graph);
    }

    return graph;
}();

static auto const sample_adj_mat = [] {
    using namespace boost;
    adj_mat_t graph(num_vertices(sample_adj_list));
    for (auto e : make_iterator_range(edges(sample_adj_list))) {
        add_edge(source(e, sample_adj_list), target(e, sample_adj_list), graph);
    }
    return graph;
}();

template <typename graph_t> auto nth_edge(graph_t& graph, size_t n) {
    return std::next(boost::edges(graph).first, n);
}
auto nth_edge(edge_list_detail::node_based_set& lst, size_t n) {
    return std::next(lst.begin(), n);
}
auto nth_edge(edge_list_detail::flat_set& lst, size_t n) {
    return std::next(lst.begin(), n);
}

template <typename graph_t> void OP_algo(nonius::chronometer& cm, graph_t graph) {
    // Number of edges.
    cm.measure([&] {
        unsigned int nb_edges = boost::num_edges(graph);

        // Defines a function that give a random edge.
        std::uniform_int_distribution<int> get_rand_edge(0, nb_edges - 1);

        // Descriptors and iterators.
        typename graph_t::vertex_descriptor v1, v2, v3, v4;
        typename graph_t::edge_iterator e1_it, e2_it, e_end;

        // Shuffles the edges, with the condition of not creating multiple edges or self-loops.
        unsigned int nb_edge_swaps(0);
        while(nb_edge_swaps < 10 * nb_edges)
        {
            {
                e1_it = nth_edge(graph, get_rand_edge(engine));
                v1 = boost::source(*e1_it, graph);
                v2 = boost::target(*e1_it, graph);

                e2_it = nth_edge(graph, get_rand_edge(engine));
                v3 = boost::source(*e2_it, graph);
                v4 = boost::target(*e2_it, graph);
            }

            // Avoids self-loops.
            if((v1 != v3) && (v2 != v4))
            {
                // Avoids multiple edge.
                if(boost::edge(v1, v3, graph).second == false)
                {
                    // Avoids multiple edge.
                    if(boost::edge(v2, v4, graph).second == false)
                    {
                        // Destroys the old edges.
                        boost::remove_edge(*e1_it, graph);
                        boost::remove_edge(boost::edge(v3, v4, graph).first, graph);
                        // Creates the new edges.
                        boost::add_edge(v1, v3, graph);
                        boost::add_edge(v2, v4, graph);
                        // Counts the number of changes.
                        ++nb_edge_swaps;
                    }
                }
            }
        }
        return;
        {
            std::ofstream ofs("/tmp/shuffled.dot");
            boost::write_graphviz(ofs, graph);
        }
    });

}

template <typename list_t> void edge_list_algo(nonius::chronometer& cm, list_t& lst) {
    cm.measure([&] {
        unsigned int nb_edges = lst.size();

        // Defines a function that give a random edge.
        std::uniform_int_distribution<int> get_rand_edge(0, nb_edges - 1);

        // Shuffles the edges, with the condition of not creating multiple edges or self-loops.
        unsigned int nb_edge_swaps(0);
        while(nb_edge_swaps < 10 * nb_edges)
        {
            auto e1 = nth_edge(lst, get_rand_edge(engine));
            auto v1 = e1->s;
            auto v2 = e1->t;

            auto e2 = nth_edge(lst, get_rand_edge(engine));
            auto v3 = e2->s;
            auto v4 = e2->t;

            // Avoids self-loops.
            // Avoids multiple edge.
            if ((v1 == v3) || (v2 == v4) || lst.count({v1,v3}) || lst.count({v2,v4}))
                continue;

            // swap edges
            edge_list_detail::erase_two(lst, e1, e2);
            lst.emplace(v1, v3);
            lst.emplace(v2, v4);

            // Counts the number of changes.
            ++nb_edge_swaps;
        }
        return;
    });

}

template <typename edge_list>
void edge_list_config(nonius::chronometer& cm) {
        using namespace boost;
        edge_list lst;
        {
            edge_list_detail::reserve(lst, num_edges(sample_adj_list));
            for (auto e : make_iterator_range(edges(sample_adj_list))) {
                lst.emplace(source(e, sample_adj_list), target(e, sample_adj_list));
            }
        }
        edge_list_algo(cm, lst); 

        typedef boost::edge_list<typename edge_list::iterator> graph_t;
        graph_t graph(lst.begin(), lst.end());
        {
            std::ofstream ofs("/tmp/edge_list.dot");
            //boost::write_graphviz(ofs, graph);
        }
}

NONIUS_BENCHMARK("original_adj_list",   [](nonius::chronometer cm) { OP_algo(cm,        sample_adj_list);        });
NONIUS_BENCHMARK("original_adj_matrix", [](nonius::chronometer cm) { OP_algo(cm,        sample_adj_mat);         });
NONIUS_BENCHMARK("node_based_edge_list",[](nonius::chronometer cm) { edge_list_config<edge_list_detail::node_based_set>(cm); });
NONIUS_BENCHMARK("flat_edge_list",      [](nonius::chronometer cm) { edge_list_config<edge_list_detail::flat_set>(cm); });

#define NONIUS_RUNNER
#include <nonius/main.h++>

要创建图:

./test -r html -o stats.html

¹(nth_edge以下为通用代码,对于adjacency_matrix而言效率不高)。

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